AABR07027306.1 (null) - Rat Genome Database

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Gene: AABR07027306.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07027306.1
Name:
RGD ID: 15003411
Description: Predicted to enable protein phosphatase 1 binding activity and protein phosphatase inhibitor activity. Predicted to be involved in actin cytoskeleton reorganization and negative regulation of phosphoprotein phosphatase activity. Predicted to be located in cytoplasm; nucleus; and synapse.
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1723,661,429 - 23,761,079 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)
synapse  (IEA)

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 15 68 14 21 11
Low 3 28 50 34 19 34 8 11 6 21 20 8
Below cutoff 7 7 7

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000046523   ⟹   ENSRNOP00000043053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1723,661,429 - 23,761,079 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000014264 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000043053 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046523 UniProtKB/TrEMBL
InterPro Phactr1 UniProtKB/TrEMBL
  RPEL_repeat UniProtKB/TrEMBL
PANTHER PTHR12751:SF6 UniProtKB/TrEMBL
Pfam RPEL UniProtKB/TrEMBL
PhenoGen AABR07027306.1 PhenoGen
PROSITE RPEL UniProtKB/TrEMBL
SMART RPEL UniProtKB/TrEMBL
UniProt F1LNB2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07027306.1        Symbol and Name status set to provisional 45752 PROVISIONAL