AABR07006691.1 (null) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: AABR07006691.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07006691.1
Name:
RGD ID: 15003377
Description: Predicted to enable mannose binding activity. Predicted to be involved in complement activation, classical pathway and complement activation, lectin pathway. Predicted to be part of collagen trimer.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1228,016,498 - 228,043,066 (+)Ensembl
Rnor_6.0 Ensembl1248,428,099 - 248,463,139 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:83
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000050984
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hepatobiliary system reproductive system respiratory system
High
Medium
Low 35 35 35
Below cutoff 7 6 6 4 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000050984   ⟹   ENSRNOP00000047103
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1228,016,498 - 228,043,066 (+)Ensembl
Rnor_6.0 Ensembl1248,428,099 - 248,463,139 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000047103   ⟸   ENSRNOT00000050984
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A140UHW8-F1-model_v2 AlphaFold A0A140UHW8 1-371 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000011637 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000047103 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050984 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Mannose-binding_protein_C UniProtKB/TrEMBL
PANTHER PTHR24024:SF34 UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
PhenoGen AABR07006691.1 PhenoGen
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A140UHW8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07006691.1        Symbol and Name status set to provisional 45752 PROVISIONAL