AABR07029605.1 (null) - Rat Genome Database

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Gene: AABR07029605.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07029605.1
Name:
RGD ID: 15003347
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cellular response to starvation (ortholog); immature B cell differentiation (ortholog); negative regulation of cysteine-type endopeptidase activity involved in apoptotic process (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1039,850,818 - 39,870,188 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 26 34 18 17 18 8 9 68 33 39 11 8
Low 3 17 23 23 2 23 2 6 2 2
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000012671   ⟹   ENSRNOP00000012671
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1039,850,818 - 39,870,188 (+)Ensembl
Protein Sequences
Reference Sequences
RefSeq Acc Id: ENSRNOP00000012671   ⟸   ENSRNOT00000012671
Protein Domains
UDENN FNIP1/2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000009104 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000012671 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012671 UniProtKB/TrEMBL
InterPro DENN_FNIP1/2 UniProtKB/TrEMBL
  FNIP_C_dom UniProtKB/TrEMBL
  FNIP_fam UniProtKB/TrEMBL
  FNIP_mid_dom UniProtKB/TrEMBL
Pfam FNIP_C UniProtKB/TrEMBL
  FNIP_M UniProtKB/TrEMBL
PhenoGen AABR07029605.1 PhenoGen
PRINTS FOLLICULNIP1 UniProtKB/TrEMBL
PROSITE DENN_FNIP12 UniProtKB/TrEMBL
UniProt F1LUD4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07029605.1        Symbol and Name status set to provisional 45752 PROVISIONAL