AABR07054614.1 (null) - Rat Genome Database

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Gene: AABR07054614.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07054614.1
Name:
RGD ID: 15003334
Description: Predicted to enable several functions, including heme binding activity; iron ion binding activity; and prostaglandin-I synthase activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; negative regulation of nitric oxide biosynthetic process; and positive regulation of execution phase of apoptosis. Predicted to be located in caveola; endoplasmic reticulum membrane; and nucleus.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl3163,950,777 - 163,986,059 (-)EnsemblRnor6.0rn6Rnor6.0


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 40 14 14 14 2 29 11
Low 1 3 39 23 17 23 7 10 74 33 12 7
Below cutoff 4 4 2 4 1 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000010891   ⟹   ENSRNOP00000010891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3155,928,564 - 155,951,645 (-)Ensembl
Rnor_6.0 Ensembl3163,950,777 - 163,986,059 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082474   ⟹   ENSRNOP00000074093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3155,928,564 - 155,953,292 (-)Ensembl
Rnor_6.0 Ensembl3163,950,883 - 163,986,054 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103286   ⟹   ENSRNOP00000088713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3155,916,412 - 155,965,451 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105814   ⟹   ENSRNOP00000077774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3155,925,619 - 155,964,267 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115486   ⟹   ENSRNOP00000087709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3155,928,570 - 155,965,451 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000077774.1
  ENSRNOP00000088713.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000074093   ⟸   ENSRNOT00000082474
RefSeq Acc Id: ENSRNOP00000010891   ⟸   ENSRNOT00000010891
RefSeq Acc Id: ENSRNOP00000088713   ⟸   ENSRNOT00000103286
RefSeq Acc Id: ENSRNOP00000077774   ⟸   ENSRNOT00000105814
RefSeq Acc Id: ENSRNOP00000087709   ⟸   ENSRNOT00000115486

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000008245 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000103286.1 UniProtKB/TrEMBL
  ENSRNOT00000105814.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CYP7A1-type UniProtKB/TrEMBL
  Cyt_P450_E_grp-IV UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
  PTGIS UniProtKB/TrEMBL
PANTHER PTHR24306 UniProtKB/TrEMBL
  PTHR24306:SF4 UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PhenoGen AABR07054614.1 PhenoGen
PIRSF Cytochrome_CYPVIIA1 UniProtKB/TrEMBL
  PTGIS UniProtKB/TrEMBL
PRINTS EP450IV UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008245 RatGTEx
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A8I5Y1K4_RAT UniProtKB/TrEMBL
  A0A8I6ABA7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07054614.1        Symbol and Name status set to provisional 45752 PROVISIONAL