AABR07058116.1 (null) - Rat Genome Database

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Gene: AABR07058116.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07058116.1
Name:
RGD ID: 15003286
Description: Predicted to enable NAD binding activity and protein homodimerization activity. Predicted to be involved in carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Predicted to be part of glycerol-3-phosphate dehydrogenase complex.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl7100,700,670 - 100,701,725 (+)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:24
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000006506
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 6
Low 1
Below cutoff 1 7 1 9 1 2 2 4 2 3 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000006506
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7100,700,670 - 100,701,725 (+)Ensembl
Protein Sequences
Reference Sequences
Protein Domains
NAD_Gly3P_dh_C   NAD_Gly3P_dh_N

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000004906 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000078340.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006506.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1040.10 UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/TrEMBL
  6PGD_dom2 UniProtKB/TrEMBL
  G3P_DH_NAD-dep UniProtKB/TrEMBL
  G3P_DH_NAD-dep_C UniProtKB/TrEMBL
  G3P_DH_NAD-dep_euk UniProtKB/TrEMBL
  G3P_DH_NAD-dep_N UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
Pfam NAD_Gly3P_dh_C UniProtKB/TrEMBL
  NAD_Gly3P_dh_N UniProtKB/TrEMBL
PhenoGen AABR07058116.1 PhenoGen
PIRSF Glycerol-3-P_dh UniProtKB/TrEMBL
PRINTS GPDHDRGNASE UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
TIGRFAMs glycerol3P_DH UniProtKB/TrEMBL
UniProt A0A8I5ZKP8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07058116.1        Symbol and Name status set to provisional 45752 PROVISIONAL