4933400A11Rik (RIKEN cDNA 4933400A11 gene) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: 4933400A11Rik (RIKEN cDNA 4933400A11 gene) Rattus norvegicus
Analyze
Symbol: 4933400A11Rik
Name: RIKEN cDNA 4933400A11 gene
RGD ID: 15003266
Description:
Type: protein-coding
Latest Assembly: Rnor_6.0 Ensembl - RGSC Genome Assembly v6.0 Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 EnsemblX25,737,292 - 25,738,155 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 5
Low 3 6 1 5 1 7 7 8 8 10 7
Below cutoff 9 12 4 10 4 1 4 2 3 1 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000004893   ⟹   ENSRNOP00000004893
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX25,737,292 - 25,738,155 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000003688 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000004893 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004893 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1290.20 UniProtKB/TrEMBL
  2.40.160.80 UniProtKB/TrEMBL
InterPro CapZ_alpha UniProtKB/TrEMBL
  CapZ_alpha/beta UniProtKB/TrEMBL
  CapZ_alpha/beta_2 UniProtKB/TrEMBL
  CapZ_alpha_1 UniProtKB/TrEMBL
PANTHER PTHR10653 UniProtKB/TrEMBL
Pfam F-actin_cap_A UniProtKB/TrEMBL
PhenoGen 4933400A11Rik PhenoGen
PRINTS FACTINCAPA UniProtKB/TrEMBL
Superfamily-SCOP SSF90096 UniProtKB/TrEMBL
UniProt D3ZVN8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 4933400A11Rik  RIKEN cDNA 4933400A11 gene      Symbol and Name status set to provisional 45752 PROVISIONAL