AABR07012587.1 (null) - Rat Genome Database

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Gene: AABR07012587.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07012587.1
Name:
RGD ID: 15003237
Description: Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be part of mitochondrial respiratory chain complex IV.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl2184,004,618 - 184,004,868 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2198,591,407 - 198,591,655 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:33
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000003022
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1
Low 2 8 15 2 10 2 7 7 6 4 23 4 7
Below cutoff 3 6 4 3 4 1 1 10 8 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000003022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2184,004,618 - 184,004,868 (-)Ensembl
Rnor_6.0 Ensembl2198,591,407 - 198,591,655 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000087046.1
Reference Protein Sequences

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000002223 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003022.4 UniProtKB/TrEMBL
Gene3D-CATH 4.10.91.10 UniProtKB/TrEMBL
InterPro Cyt_c_oxidase_su7a_sf UniProtKB/TrEMBL
  Cytc_oxidase_su7a_met UniProtKB/TrEMBL
PANTHER CYTOCHROME C OXIDASE SUBUNIT 7A2, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR10510 UniProtKB/TrEMBL
PhenoGen AABR07012587.1 PhenoGen
RatGTEx ENSRNOG00000002223 RatGTEx
Superfamily-SCOP SSF81419 UniProtKB/TrEMBL
UniProt A0A8I6A6K4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07012587.1        Symbol and Name status set to provisional 45752 PROVISIONAL