Gm22888 (predicted gene, 22888) - Rat Genome Database

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Gene: Gm22888 (predicted gene, 22888) Mus musculus
Analyze
Symbol: Gm22888
Name: predicted gene, 22888
RGD ID: 15003000
MGI Page MGI
Description: INTERACTS WITH leflunomide (ortholog)
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,203,057 - 41,203,133 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,203,057 - 41,203,133 (-)EnsemblGRCm39 Ensembl
GRCm38441,203,057 - 41,203,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,203,057 - 41,203,133 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4A5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
leflunomide  (ISO)

References

Genomics

Comparative Map Data
Gm22888
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,203,057 - 41,203,133 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,203,057 - 41,203,133 (-)EnsemblGRCm39 Ensembl
GRCm38441,203,057 - 41,203,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,203,057 - 41,203,133 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4A5NCBI
SNORD121B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,934,297 - 33,934,375 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,934,296 - 33,934,376 (-)EnsemblGRCh38hg38GRCh38
GRCh37933,934,295 - 33,934,373 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,924,286 - 33,924,378 (-)NCBINCBI36Build 36hg18NCBI36
Celera933,866,087 - 33,866,179 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef933,892,055 - 33,892,133 (-)NCBIHuRef
CHM1_1933,934,048 - 33,934,126 (-)NCBICHM1_1
T2T-CHM13v2.0933,952,897 - 33,952,975 (-)NCBIT2T-CHM13v2.0
Snord121b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,152,182 - 61,152,258 (-)NCBIGRCr8
mRatBN7.2556,356,243 - 56,356,319 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,356,243 - 56,356,319 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl557,542,044 - 57,542,120 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map5q22NCBI
LOC119874090
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1149,322,205 - 49,322,286 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01151,633,119 - 51,633,200 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1151,633,119 - 51,633,200 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,296,701 - 50,296,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,164,220 - 50,164,301 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01150,929,371 - 50,929,452 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm22888
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:80
Interacting mature miRNAs:81
Transcripts:ENSMUST00000158640
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004942394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL807823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000158640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl441,203,057 - 41,203,133 (-)Ensembl
GRCm38.p6 Ensembl441,203,057 - 41,203,133 (-)Ensembl
RefSeq Acc Id: XR_004942394
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39441,203,057 - 41,203,133 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089265 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158640 ENTREZGENE
MGD MGI:5452665 ENTREZGENE
NCBI Gene Gm22888 ENTREZGENE
PhenoGen Gm22888 PhenoGen