Gm25777 (predicted gene, 25777) - Rat Genome Database

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Gene: Gm25777 (predicted gene, 25777) Mus musculus
Analyze
Symbol: Gm25777
Name: predicted gene, 25777
RGD ID: 15002943
MGI Page MGI
Description: ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); chromosome 22q11.2 microduplication syndrome (ortholog)
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,058,581 - 18,058,706 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,058,581 - 18,058,706 (-)EnsemblGRCm39 Ensembl
GRCm381618,240,717 - 18,240,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,240,717 - 18,240,842 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25777
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,058,581 - 18,058,706 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,058,581 - 18,058,706 (-)EnsemblGRCm39 Ensembl
GRCm381618,240,717 - 18,240,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,240,717 - 18,240,842 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16A3NCBI
SNORA77B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,126,402 - 20,126,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2220,126,402 - 20,126,526 (+)EnsemblGRCh38hg38GRCh38
GRCh372220,113,925 - 20,114,049 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q11.21NCBI
T2T-CHM13v2.02220,505,438 - 20,505,562 (+)NCBIT2T-CHM13v2.0
Snora77b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,254,276 - 96,254,400 (+)NCBIGRCr8
mRatBN7.21182,749,967 - 82,750,091 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,749,967 - 82,750,091 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1186,897,949 - 86,898,073 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q23NCBI
LOC119866289
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2629,171,282 - 29,171,407 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02630,616,409 - 30,616,534 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12628,664,254 - 28,664,379 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02628,289,618 - 28,289,743 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02629,374,610 - 29,374,735 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:133
Interacting mature miRNAs:137
Transcripts:ENSMUST00000116714
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
15092082Igly9_mIgG glycosylation 9, GP17b (mouse)161477522320103513Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC084822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000116714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1618,058,581 - 18,058,706 (-)Ensembl
GRCm38.p6 Ensembl1618,240,717 - 18,240,842 (-)Ensembl
RefSeq Acc Id: XR_004939414
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391618,058,581 - 18,058,706 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080364 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000116714 ENTREZGENE
MGD MGI:5455554 ENTREZGENE
NCBI Gene Gm25777 ENTREZGENE
PhenoGen Gm25777 PhenoGen