Gm20515 (predicted gene 20515) - Rat Genome Database

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Gene: Gm20515 (predicted gene 20515) Mus musculus
Analyze
Symbol: Gm20515
Name: predicted gene 20515
RGD ID: 15002858
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39334,469,824 - 34,508,541 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl334,481,522 - 34,489,246 (-)EnsemblGRCm39 Ensembl
GRCm38334,427,371 - 34,438,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl334,427,373 - 34,435,097 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3A3NCBI
cM Map316.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm20515
1549 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:183
Count of miRNA genes:178
Interacting mature miRNAs:183
Transcripts:ENSMUST00000174440
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33263576058017363Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33263576058017363Mouse
1357689Mdmsc1_mmodifier of muscularity 1 (mouse)Not determined33332720145916479Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_003954600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000174440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl334,481,522 - 34,489,246 (-)Ensembl
GRCm38.p6 Ensembl334,427,373 - 34,435,097 (-)Ensembl
RefSeq Acc Id: XR_003954600
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,994 - 34,508,530 (-)NCBI
GRCm38334,427,371 - 34,438,840 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954601
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
GRCm38334,427,371 - 34,438,840 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954603
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
GRCm38334,427,371 - 34,438,840 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954604
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
GRCm38334,427,371 - 34,438,840 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941438
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941439
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,469,824 - 34,508,530 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941440
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941441
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,994 - 34,508,530 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941442
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941443
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941444
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941445
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941446
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941447
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941448
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941449
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941450
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941451
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941452
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39334,471,318 - 34,508,541 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092242 Ensembl
MGD MGI:5141980 ENTREZGENE
NCBI Gene Gm20515 ENTREZGENE
PhenoGen Gm20515 PhenoGen