Gm47209 (predicted gene, 47209) - Rat Genome Database
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Gene: Gm47209 (predicted gene, 47209) Mus musculus
Analyze
Symbol: Gm47209
Name: predicted gene, 47209
RGD ID: 15002785
MGI Page MGI
Description: ASSOCIATED WITH COVID-19 (ortholog)
Type: pseudo
RefSeq Status: INFERRED
Also known as: LOW QUALITY PROTEIN: reelin domain-containing protein 1; Reeld1; reeler domain containing 1
RGD Orthologs
Human
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,481,591 - 79,501,279 (-)NCBIGRCm39mm39
GRCm38878,754,962 - 78,774,650 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,754,916 - 78,774,545 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

References

Genomics

Comparative Map Data
Gm47209
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,481,591 - 79,501,279 (-)NCBIGRCm39mm39
GRCm38878,754,962 - 78,774,650 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,754,916 - 78,774,545 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8C1NCBI
REELD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4146,214,515 - 146,230,878 (+)EnsemblGRCh38hg38GRCh38
GRCh384146,214,538 - 146,232,267 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374147,144,753 - 147,152,027 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364147,357,561 - 147,371,115 (+)NCBINCBI36hg18NCBI36
Celera4144,457,570 - 144,471,492 (+)NCBI
Cytogenetic Map4q31.22NCBI
HuRef4142,865,569 - 142,872,843 (+)NCBIHuRef
CHM1_14147,113,208 - 147,129,314 (+)NCBICHM1_1
REELD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14150,210,238 - 150,226,469 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4150,212,539 - 150,226,107 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04138,538,279 - 138,569,115 (+)NCBIMhudiblu_PPA_v0panPan3
REELD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11544,691,012 - 44,698,702 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC102167861
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl882,380,149 - 82,395,384 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1882,379,126 - 82,401,525 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2887,678,764 - 87,700,538 (-)NCBISscrofa10.2Sscrofa10.2susScr3
REELD1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1792,760,101 - 92,777,208 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_067501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC167022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000218647
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,754,916 - 78,774,545 (-)Ensembl
RefSeq Acc Id: XM_030243885   ⟹   XP_030099745
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38878,754,887 - 78,755,539 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000112190 Ensembl
MGD MGI:6096013 ENTREZGENE
NCBI Gene Gm47209 ENTREZGENE
PhenoGen Gm47209 PhenoGen