Gm23245 (predicted gene, 23245) - Rat Genome Database

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Gene: Gm23245 (predicted gene, 23245) Mus musculus
Analyze
Symbol: Gm23245
Name: predicted gene, 23245
RGD ID: 15002525
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,866,603 - 129,866,737 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,866,603 - 129,866,737 (+)EnsemblGRCm39 Ensembl
GRCm385129,789,539 - 129,789,673 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,789,539 - 129,789,673 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5G1.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23245
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,866,603 - 129,866,737 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,866,603 - 129,866,737 (+)EnsemblGRCm39 Ensembl
GRCm385129,789,539 - 129,789,673 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,789,539 - 129,789,673 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5G1.3NCBI
SNORA22C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38765,065,999 - 65,066,132 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl765,065,999 - 65,066,132 (+)EnsemblGRCh38hg38GRCh38
GRCh37764,526,377 - 64,526,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q11.21NCBI
T2T-CHM13v2.0766,272,186 - 66,272,319 (+)NCBIT2T-CHM13v2.0
Snora22c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,516,893 - 32,517,027 (-)NCBIGRCr8
mRatBN7.21226,880,788 - 26,880,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,880,788 - 26,880,922 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1230,499,634 - 30,499,768 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map12q13NCBI
LOC119872417
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha62,248,767 - 2,248,900 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06353,105 - 353,238 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.16296,865 - 296,998 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06290,947 - 291,080 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06462,176 - 462,309 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm23245
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:44
Interacting mature miRNAs:45
Transcripts:ENSMUST00000083370
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
13464142Bbaa2a_mB.burgdorferi-associated arthritis 2a (mouse)5128571199130052971Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004942822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide MG954262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5129,866,603 - 129,866,737 (+)Ensembl
GRCm38.p6 Ensembl5129,789,539 - 129,789,673 (+)Ensembl
RefSeq Acc Id: XR_004942822
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,866,603 - 129,866,737 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065304 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083370 ENTREZGENE
MGD MGI:5453022 ENTREZGENE
NCBI Gene Gm23245 ENTREZGENE
PhenoGen Gm23245 PhenoGen