Gm24151 (predicted gene, 24151) - Rat Genome Database

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Gene: Gm24151 (predicted gene, 24151) Mus musculus
Analyze
Symbol: Gm24151
Name: predicted gene, 24151
RGD ID: 15002388
MGI Page MGI
Description: INTERACTS WITH 17beta-estradiol (ortholog); bisphenol A (ortholog); chromium(6+) (ortholog)
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,667,811 - 62,667,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,667,811 - 62,667,951 (+)EnsemblGRCm39 Ensembl
GRCm381162,776,985 - 62,777,125 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,776,985 - 62,777,125 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm24151
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,667,811 - 62,667,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,667,811 - 62,667,951 (+)EnsemblGRCm39 Ensembl
GRCm381162,776,985 - 62,777,125 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,776,985 - 62,777,125 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11B2NCBI
SNORA67
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,577,955 - 7,578,091 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,577,955 - 7,578,091 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,481,273 - 7,481,409 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,421,997 - 7,422,133 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,421,996 - 7,422,133NCBI
Celera177,507,596 - 7,507,732 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,375,438 - 7,375,574 (+)NCBIHuRef
CHM1_1177,490,202 - 7,490,338 (+)NCBICHM1_1
T2T-CHM13v2.0177,482,202 - 7,482,338 (+)NCBIT2T-CHM13v2.0
LOC120095401
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,884,023 - 54,884,165 (-)NCBIGRCr8
mRatBN7.21054,385,276 - 54,385,418 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,385,276 - 54,385,418 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1056,272,187 - 56,272,329 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map10q24NCBI
LOC119872053
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha532,639,239 - 32,639,379 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,604,926 - 32,605,066 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1532,572,544 - 32,572,684 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,529,006 - 32,529,146 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,708,112 - 32,708,252 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24151
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:111
Interacting mature miRNAs:112
Transcripts:ENSMUST00000082758
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL627097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000082758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,667,811 - 62,667,951 (+)Ensembl
GRCm38.p6 Ensembl1162,776,985 - 62,777,125 (+)Ensembl
RefSeq Acc Id: XR_004937326
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,667,811 - 62,667,951 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064692 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082758 ENTREZGENE
MGD MGI:5453928 ENTREZGENE
NCBI Gene Gm24151 ENTREZGENE
PhenoGen Gm24151 PhenoGen