Gm22549 (predicted gene, 22549) - Rat Genome Database

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Gene: Gm22549 (predicted gene, 22549) Mus musculus
Analyze
Symbol: Gm22549
Name: predicted gene, 22549
RGD ID: 15001939
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,269,177 - 87,269,283 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,269,177 - 87,269,283 (-)EnsemblGRCm39 Ensembl
GRCm38187,341,455 - 87,341,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,341,455 - 87,341,561 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1C5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22549
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,269,177 - 87,269,283 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,269,177 - 87,269,283 (-)EnsemblGRCm39 Ensembl
GRCm38187,341,455 - 87,341,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,341,455 - 87,341,561 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1C5NCBI
RNU6-560P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381186,153,227 - 86,153,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1186,153,227 - 86,153,334 (+)EnsemblGRCh38hg38GRCh38
GRCh371185,864,269 - 85,864,376 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q14.2NCBI
CHM1_11185,750,099 - 85,750,206 (+)NCBICHM1_1
T2T-CHM13v2.01186,090,519 - 86,090,626 (+)NCBIT2T-CHM13v2.0
LOC119873547
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha944,951,500 - 44,951,606 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0946,627,686 - 46,627,792 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl946,627,686 - 46,627,792 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1945,397,777 - 45,397,883 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0945,692,315 - 45,692,421 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0945,746,760 - 45,746,866 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm22549
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:48
Interacting mature miRNAs:49
Transcripts:ENSMUST00000178461
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186483929120483929Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
25394563Skmw48_mskeletal muscle weight 48, EDL (mouse)18547800687323158Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004936696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000178461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,269,177 - 87,269,283 (-)Ensembl
GRCm38.p6 Ensembl187,341,455 - 87,341,561 (-)Ensembl
RefSeq Acc Id: XR_004936696
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39187,269,177 - 87,269,283 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095281 Ensembl
  ENSMUSG00000119117 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000178461 ENTREZGENE
MGD MGI:5452326 ENTREZGENE
NCBI Gene Gm22549 ENTREZGENE
PhenoGen Gm22549 PhenoGen