Gm27414 (predicted gene, 27414) - Rat Genome Database

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Gene: Gm27414 (predicted gene, 27414) Mus musculus
Analyze
Symbol: Gm27414
Name: predicted gene, 27414
RGD ID: 15001800
MGI Page MGI
Description:
Type: ncrna (Ensembl: scaRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X114,308,512 - 114,308,892 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX114,308,512 - 114,308,892 (+)EnsemblGRCm39 Ensembl
GRCm38X115,398,815 - 115,399,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX115,398,815 - 115,399,195 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXE1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm27414
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:24
Interacting mature miRNAs:24
Transcripts:ENSMUST00000185033
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL844867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000185033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX114,308,512 - 114,308,892 (+)Ensembl
GRCm38.p6 EnsemblX115,398,815 - 115,399,195 (+)Ensembl
RefSeq Acc Id: XR_004940569
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X114,308,512 - 114,308,892 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098405 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000185033 ENTREZGENE
MGD MGI:5530796 ENTREZGENE
NCBI Gene Gm27414 ENTREZGENE
PhenoGen Gm27414 PhenoGen