Mir1911 (microRNA 1911) - Rat Genome Database

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Gene: Mir1911 (microRNA 1911) Mus musculus
Analyze
Symbol: Mir1911
Name: microRNA 1911
RGD ID: 15001510
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm24627; mmu-mir-1911
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X145,889,961 - 145,890,043 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX145,889,935 - 145,890,072 (+)EnsemblGRCm39 Ensembl
GRCm38X147,106,965 - 147,107,047 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX147,106,939 - 147,107,076 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXF2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:26473382  


Genomics

Variants

.
Variants in Mir1911
3 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:69
Count of gene targets:
Count of transcripts:
Interacting mature miRNAs:69
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_162774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL808014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000122764
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX145,889,935 - 145,890,072 (+)Ensembl
GRCm38.p6 EnsemblX147,106,939 - 147,107,076 (+)Ensembl
RefSeq Acc Id: NR_162774
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X145,889,961 - 145,890,043 (+)NCBI
GRCm38X147,106,965 - 147,107,047 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084713 Ensembl
MGD MGI:5454404 ENTREZGENE
miRBase MI0039504 ENTREZGENE
NCBI Gene Gm24627 ENTREZGENE
PhenoGen Mir1911 PhenoGen
RNAcentral URS0000D504FA RNACentral
  URS0000D507DD RNACentral
  URS0000D50B6F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-04-26 Mir1911  microRNA 1911  Gm24627  predicted gene, 24627  Symbol and/or name updated 27372883 PROVISIONAL