Gm25679 (predicted gene, 25679) - Rat Genome Database

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Gene: Gm25679 (predicted gene, 25679) Mus musculus
Analyze
No known orthologs.
Symbol: Gm25679
Name: predicted gene, 25679
RGD ID: 15001487
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391254,765,941 - 54,766,104 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1254,765,941 - 54,766,104 (-)EnsemblGRCm39 Ensembl
GRCm381254,719,163 - 54,719,326 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1254,719,163 - 54,719,326 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm25679
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:71
Interacting mature miRNAs:71
Transcripts:ENSMUST00000101973
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125315562457276756Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT030142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000101973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1254,719,163 - 54,719,326 (-)Ensembl
RefSeq Acc Id: ENSMUST00001239507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1254,765,941 - 54,766,104 (-)Ensembl
RefSeq Acc Id: XR_004937853
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391254,765,941 - 54,766,104 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096659 Ensembl
  ENSMUSG00000118864 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00001239507 ENTREZGENE
MGD MGI:5455456 ENTREZGENE
NCBI Gene Gm25679 ENTREZGENE
PhenoGen Gm25679 PhenoGen