Gm26040 (predicted gene, 26040) - Rat Genome Database

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Gene: Gm26040 (predicted gene, 26040) Mus musculus
Analyze
No known orthologs.
Symbol: Gm26040
Name: predicted gene, 26040
RGD ID: 15001418
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39327,922,262 - 27,922,422 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl327,922,262 - 27,922,422 (+)EnsemblGRCm39 Ensembl
GRCm38327,868,113 - 27,868,273 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl327,868,113 - 27,868,273 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm26040
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:91
Interacting mature miRNAs:96
Transcripts:ENSMUST00000158147
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
12904010Cfq8_mconditioned fear QTL 8 (mouse)32476823231332103Mouse
13432186Rotse1_mrotarod training saline/ethanol 1 (mouse)32665522728355227Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004941762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000158147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl327,922,262 - 27,922,422 (+)Ensembl
GRCm38.p6 Ensembl327,868,113 - 27,868,273 (+)Ensembl
RefSeq Acc Id: XR_004941762
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39327,922,262 - 27,922,422 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088772 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158147 ENTREZGENE
MGD MGI:5455817 ENTREZGENE
NCBI Gene Gm26040 ENTREZGENE
PhenoGen Gm26040 PhenoGen