Gm25524 (predicted gene, 25524) - Rat Genome Database

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Gene: Gm25524 (predicted gene, 25524) Mus musculus
Analyze
Symbol: Gm25524
Name: predicted gene, 25524
RGD ID: 15001325
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,251,972 - 74,252,078 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,251,972 - 74,252,078 (+)EnsemblGRCm39 Ensembl
GRCm38174,212,813 - 74,212,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,212,813 - 74,212,919 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25524
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,251,972 - 74,252,078 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,251,972 - 74,252,078 (+)EnsemblGRCm39 Ensembl
GRCm38174,212,813 - 74,212,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,212,813 - 74,212,919 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1C3NCBI
RNU6-829P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38993,375,556 - 93,375,631 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl993,375,556 - 93,375,667 (+)EnsemblGRCh38hg38GRCh38
GRCh37996,137,838 - 96,137,913 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q22.31NCBI
CHM1_1996,284,917 - 96,284,992 (+)NCBICHM1_1
T2T-CHM13v2.09105,542,953 - 105,543,028 (+)NCBIT2T-CHM13v2.0
LOC119865091
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2125,013,997 - 25,014,102 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02125,457,658 - 25,457,763 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2125,457,658 - 25,457,763 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12125,250,039 - 25,250,144 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02125,453,074 - 25,453,179 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02125,366,481 - 25,366,586 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm25524
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:84
Interacting mature miRNAs:87
Transcripts:ENSMUST00000101821
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004936702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000101821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl174,212,813 - 74,212,919 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122560
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,251,972 - 74,252,078 (+)Ensembl
RefSeq Acc Id: XR_004936702
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,251,972 - 74,252,078 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094768 Ensembl
  ENSMUSG00000118939 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000122560 ENTREZGENE
MGD MGI:5455301 ENTREZGENE
NCBI Gene Gm25524 ENTREZGENE
PhenoGen Gm25524 PhenoGen