Gm24578 (predicted gene, 24578) - Rat Genome Database

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Gene: Gm24578 (predicted gene, 24578) Mus musculus
Analyze
Symbol: Gm24578
Name: predicted gene, 24578
RGD ID: 15001193
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391410,135,859 - 10,135,987 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1410,135,859 - 10,135,987 (+)EnsemblGRCm39 Ensembl
GRCm381412,333,776 - 12,333,904 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1412,333,776 - 12,333,904 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm24578
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:175
Interacting mature miRNAs:180
Transcripts:ENSMUST00000103970
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412071Ssen3_msuseptibility to Sendai virus 3 (mouse)Not determined14126987934Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
13824988Phsq1_mpercent hyperactivated sperm QTL 1 (mouse)14305000119469772Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004938721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC156025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000103970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1410,135,859 - 10,135,987 (+)Ensembl
GRCm38.p6 Ensembl1412,333,776 - 12,333,904 (-)Ensembl
RefSeq Acc Id: XR_004938721
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391410,135,859 - 10,135,987 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000077158 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000103970 ENTREZGENE
MGD MGI:5454355 ENTREZGENE
NCBI Gene Gm24578 ENTREZGENE
PhenoGen Gm24578 PhenoGen