Gm22382 (predicted gene, 22382) - Rat Genome Database

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Gene: Gm22382 (predicted gene, 22382) Mus musculus
Analyze
Symbol: Gm22382
Name: predicted gene, 22382
RGD ID: 15000880
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39968,187,856 - 68,187,985 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl968,187,856 - 68,187,985 (+)EnsemblGRCm39 Ensembl
GRCm38968,280,574 - 68,280,703 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl968,280,574 - 68,280,703 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22382
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39968,187,856 - 68,187,985 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl968,187,856 - 68,187,985 (+)EnsemblGRCm39 Ensembl
GRCm38968,280,574 - 68,280,703 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl968,280,574 - 68,280,703 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9CNCBI
SNORA40C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386110,848,546 - 110,848,673 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6110,848,546 - 110,848,673 (+)EnsemblGRCh38hg38GRCh38
GRCh376111,169,749 - 111,169,876 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q21NCBI
T2T-CHM13v2.06112,027,148 - 112,027,275 (+)NCBIT2T-CHM13v2.0
LOC120097272
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,128,564 - 13,128,694 (-)NCBIGRCr8
mRatBN7.21510,698,025 - 10,698,155 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1510,698,025 - 10,698,155 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map15p16NCBI

Variants

.
Variants in Gm22382
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:96
Interacting mature miRNAs:100
Transcripts:ENSMUST00000158185
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95780504771481754Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95878431868556008Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004935962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC164984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000158185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl968,187,856 - 68,187,985 (+)Ensembl
GRCm38.p6 Ensembl968,280,574 - 68,280,703 (+)Ensembl
RefSeq Acc Id: XR_004935962
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39968,187,856 - 68,187,985 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088810 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158185 ENTREZGENE
MGD MGI:5452159 ENTREZGENE
NCBI Gene Gm22382 ENTREZGENE
PhenoGen Gm22382 PhenoGen