Gm25589 (predicted gene, 25589) - Rat Genome Database

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Gene: Gm25589 (predicted gene, 25589) Mus musculus
Analyze
Symbol: Gm25589
Name: predicted gene, 25589
RGD ID: 15000839
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,113,440 - 29,113,605 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,113,440 - 29,113,605 (-)EnsemblGRCm39 Ensembl
GRCm38629,113,441 - 29,113,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,113,441 - 29,113,606 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25589
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,113,440 - 29,113,605 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,113,440 - 29,113,605 (-)EnsemblGRCm39 Ensembl
GRCm38629,113,441 - 29,113,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,113,441 - 29,113,606 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6A3.3NCBI
RNU1-46P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381851,283,733 - 51,283,890 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1851,283,733 - 51,283,896 (-)EnsemblGRCh38hg38GRCh38
GRCh371848,810,103 - 48,810,260 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q21.2NCBI
CHM1_11848,805,429 - 48,805,586 (-)NCBICHM1_1
T2T-CHM13v2.01851,485,494 - 51,485,651 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm25589
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:54
Interacting mature miRNAs:56
Transcripts:ENSMUST00000082502
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004933941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl629,113,440 - 29,113,605 (-)Ensembl
GRCm38.p6 Ensembl629,113,441 - 29,113,606 (-)Ensembl
RefSeq Acc Id: XR_004933941
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39629,113,440 - 29,113,605 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064436 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082502 ENTREZGENE
MGD MGI:5455366 ENTREZGENE
NCBI Gene Gm25589 ENTREZGENE
PhenoGen Gm25589 PhenoGen