Gm24162 (predicted gene, 24162) - Rat Genome Database

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Gene: Gm24162 (predicted gene, 24162) Mus musculus
Analyze
Symbol: Gm24162
Name: predicted gene, 24162
RGD ID: 15000748
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39120,515,035 - 20,515,136 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl120,515,035 - 20,515,136 (-)EnsemblGRCm39 Ensembl
GRCm38120,444,811 - 20,444,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl120,444,811 - 20,444,912 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1A4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24162
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39120,515,035 - 20,515,136 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl120,515,035 - 20,515,136 (-)EnsemblGRCm39 Ensembl
GRCm38120,444,811 - 20,444,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl120,444,811 - 20,444,912 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1A4NCBI
RNU6-908P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381029,711,915 - 29,712,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1029,711,915 - 29,712,008 (+)EnsemblGRCh38hg38GRCh38
GRCh371030,000,844 - 30,000,937 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10p11.23NCBI
CHM1_11030,000,747 - 30,000,840 (+)NCBICHM1_1
T2T-CHM13v2.01029,742,952 - 29,743,045 (+)NCBIT2T-CHM13v2.0
LOC119869465
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha158,759,737 - 8,759,843 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0158,730,043 - 8,730,149 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,730,043 - 8,730,149 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,542,713 - 8,542,819 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,632,314 - 8,632,420 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,648,073 - 8,648,179 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24162
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:82
Interacting mature miRNAs:86
Transcripts:ENSMUST00000093665
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004936700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC101789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000093665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl120,515,035 - 20,515,136 (-)Ensembl
GRCm38.p6 Ensembl120,444,811 - 20,444,912 (-)Ensembl
RefSeq Acc Id: XR_004936700
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39120,515,035 - 20,515,136 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000070175 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093665 ENTREZGENE
MGD MGI:5453939 ENTREZGENE
NCBI Gene Gm24162 ENTREZGENE
PhenoGen Gm24162 PhenoGen