Gm26000 (predicted gene, 26000) - Rat Genome Database

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Gene: Gm26000 (predicted gene, 26000) Mus musculus
Analyze
Symbol: Gm26000
Name: predicted gene, 26000
RGD ID: 15000372
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X97,858,381 - 97,858,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX97,858,381 - 97,858,487 (+)EnsemblGRCm39 Ensembl
GRCm38X98,814,775 - 98,814,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX98,814,775 - 98,814,881 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXC3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm26000
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X97,858,381 - 97,858,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX97,858,381 - 97,858,487 (+)EnsemblGRCm39 Ensembl
GRCm38X98,814,775 - 98,814,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX98,814,775 - 98,814,881 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXC3NCBI
RNU6-314P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,098,704 - 16,098,807 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,098,704 - 16,098,807 (+)EnsemblGRCh38hg38GRCh38
GRCh371716,002,018 - 16,002,121 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p12NCBI
CHM1_11716,011,815 - 16,011,918 (+)NCBICHM1_1
T2T-CHM13v2.01716,001,013 - 16,001,116 (+)NCBIT2T-CHM13v2.0
LOC120099429
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X67,929,774 - 67,929,880 (+)NCBIGRCr8
mRatBN7.2X63,889,578 - 63,889,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX63,889,578 - 63,889,684 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX68,474,154 - 68,474,260 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq22NCBI
LOC119871394
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha38,086,749 - 8,086,854 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.036,569,772 - 6,569,877 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl36,569,772 - 6,569,877 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.136,514,085 - 6,514,190 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.036,528,088 - 6,528,193 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.036,687,580 - 6,687,685 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm26000
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSMUST00000157991
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL672103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000157991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX97,858,381 - 97,858,487 (+)Ensembl
GRCm38.p6 EnsemblX98,814,775 - 98,814,881 (+)Ensembl
RefSeq Acc Id: XR_004940499
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X97,858,381 - 97,858,487 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088616 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157991 ENTREZGENE
MGD MGI:5455777 ENTREZGENE
NCBI Gene Gm26000 ENTREZGENE
PhenoGen Gm26000 PhenoGen