Gm24696 (predicted gene, 24696) - Rat Genome Database

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Gene: Gm24696 (predicted gene, 24696) Mus musculus
Analyze
Symbol: Gm24696
Name: predicted gene, 24696
RGD ID: 15000284
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391561,229,720 - 61,229,853 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1561,229,720 - 61,229,853 (-)EnsemblGRCm39 Ensembl
GRCm381561,357,871 - 61,358,004 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1561,357,871 - 61,358,004 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map15D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24696
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391561,229,720 - 61,229,853 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1561,229,720 - 61,229,853 (-)EnsemblGRCm39 Ensembl
GRCm381561,357,871 - 61,358,004 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1561,357,871 - 61,358,004 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map15D1NCBI
SNORA80D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,016,877 - 6,017,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,016,877 - 6,017,011 (+)EnsemblGRCh38hg38GRCh38
GRCh3776,056,508 - 6,056,642 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7p22.1NCBI
T2T-CHM13v2.076,134,639 - 6,134,773 (+)NCBIT2T-CHM13v2.0
Snora80d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81092,688,352 - 92,688,484 (-)NCBIGRCr8
mRatBN7.21092,188,657 - 92,188,789 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,188,657 - 92,188,789 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1095,459,101 - 95,459,233 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map10q32.1NCBI
LOC119874351
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha12773,677 - 773,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012780,180 - 780,314 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.112639,497 - 639,631 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012707,603 - 707,737 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012775,816 - 775,950 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24696
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:63
Interacting mature miRNAs:65
Transcripts:ENSMUST00000083878
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660008666371849Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152828264662282739Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152828264662282739Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153400469468004804Mouse
1301324Cdif_mcolor difference (mouse)Not determined153597590669976019Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153910039573100593Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4017702272372580Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154556339669171849Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1357661Eae2b_msusceptibility to experimental allergic encephalomyelitis 2b (mouse)Not determined155100469464944308Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1561,229,720 - 61,229,853 (-)Ensembl
GRCm38.p6 Ensembl1561,357,871 - 61,358,004 (-)Ensembl
RefSeq Acc Id: XR_004939072
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391561,229,720 - 61,229,853 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065812 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083878 ENTREZGENE
MGD MGI:5454473 ENTREZGENE
NCBI Gene Gm24696 ENTREZGENE
PhenoGen Gm24696 PhenoGen