Gm25269 (predicted gene, 25269) - Rat Genome Database

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Gene: Gm25269 (predicted gene, 25269) Mus musculus
Analyze
Symbol: Gm25269
Name: predicted gene, 25269
RGD ID: 15000162
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,492,673 - 188,492,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,492,673 - 188,492,776 (+)EnsemblGRCm39 Ensembl
GRCm381188,760,476 - 188,760,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,760,476 - 188,760,579 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1H6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25269
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,492,673 - 188,492,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,492,673 - 188,492,776 (+)EnsemblGRCm39 Ensembl
GRCm381188,760,476 - 188,760,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,760,476 - 188,760,579 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1H6NCBI
RNU6-352P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381101,859,851 - 101,859,957 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1101,859,851 - 101,859,957 (+)EnsemblGRCh38hg38GRCh38
GRCh371102,325,407 - 102,325,513 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p21.1NCBI
CHM1_11102,440,744 - 102,440,850 (+)NCBICHM1_1
T2T-CHM13v2.01101,709,042 - 101,709,148 (+)NCBIT2T-CHM13v2.0
LOC120096466
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813102,839,265 - 102,839,368 (+)NCBIGRCr8
mRatBN7.213100,307,962 - 100,308,065 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13100,307,962 - 100,308,065 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl13107,231,952 - 107,232,028 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map13q26NCBI
LOC119871689
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha436,930,692 - 36,930,797 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0437,330,775 - 37,330,880 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,330,775 - 37,330,880 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1437,156,059 - 37,156,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,343,703 - 37,343,808 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0437,852,726 - 37,852,831 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm25269
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:102
Interacting mature miRNAs:102
Transcripts:ENSMUST00000122601
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1180832317191851043Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1180832317191851043Mouse
4141034Bmd1c_mbone mineral density 1c (mouse)Not determined185909790189303617Mouse
14700798Mencq1_mmeniscus calcification QTL 1 (mouse)1187333197189051197Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004936738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000122601
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,492,673 - 188,492,776 (+)Ensembl
GRCm38.p6 Ensembl1188,760,476 - 188,760,579 (+)Ensembl
RefSeq Acc Id: XR_004936738
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,492,673 - 188,492,776 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084550 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000122601 ENTREZGENE
MGD MGI:5455046 ENTREZGENE
NCBI Gene Gm25269 ENTREZGENE
PhenoGen Gm25269 PhenoGen