Gm26285 (predicted gene, 26285) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm26285 (predicted gene, 26285) Mus musculus
Analyze
Symbol: Gm26285
Name: predicted gene, 26285
RGD ID: 15000145
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395139,429,354 - 139,429,460 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5139,429,354 - 139,429,460 (+)EnsemblGRCm39 Ensembl
GRCm385139,443,599 - 139,443,705 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5139,443,599 - 139,443,705 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5G2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm26285
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395139,429,354 - 139,429,460 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5139,429,354 - 139,429,460 (+)EnsemblGRCm39 Ensembl
GRCm385139,443,599 - 139,443,705 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5139,443,599 - 139,443,705 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5G2NCBI
RNU6-393P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38798,794,719 - 98,794,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl798,794,718 - 98,794,824 (-)EnsemblGRCh38hg38GRCh38
GRCh37798,392,342 - 98,392,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q22.1NCBI
CHM1_1798,322,819 - 98,322,924 (-)NCBICHM1_1
T2T-CHM13v2.07100,026,409 - 100,026,514 (-)NCBIT2T-CHM13v2.0
LOC119864329
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1837,628,793 - 37,628,898 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01838,753,937 - 38,754,042 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1838,753,937 - 38,754,042 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11838,342,969 - 38,343,074 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01837,915,476 - 37,915,581 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01838,542,650 - 38,542,755 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:117
Interacting mature miRNAs:121
Transcripts:ENSMUST00000177923
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004942780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000177923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5139,429,354 - 139,429,460 (+)Ensembl
GRCm38.p6 Ensembl5139,443,599 - 139,443,705 (+)Ensembl
RefSeq Acc Id: XR_004942780
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395139,429,354 - 139,429,460 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095016 Ensembl
  ENSMUSG00000119383 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000177923 ENTREZGENE
MGD MGI:5456062 ENTREZGENE
NCBI Gene Gm26285 ENTREZGENE
PhenoGen Gm26285 PhenoGen