Gm22005 (predicted gene, 22005) - Rat Genome Database

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Gene: Gm22005 (predicted gene, 22005) Mus musculus
Analyze
Symbol: Gm22005
Name: predicted gene, 22005
RGD ID: 14999870
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,292,415 - 3,292,555 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,292,415 - 3,292,555 (-)EnsemblGRCm39 Ensembl
GRCm3823,291,378 - 3,291,518 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,291,378 - 3,291,518 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22005
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,292,415 - 3,292,555 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,292,415 - 3,292,555 (-)EnsemblGRCm39 Ensembl
GRCm3823,291,378 - 3,291,518 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,291,378 - 3,291,518 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A1NCBI
RNU4-80P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381559,212,648 - 59,212,788 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1559,212,648 - 59,212,788 (-)EnsemblGRCh38hg38GRCh38
GRCh371559,504,847 - 59,504,987 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q22.2NCBI
CHM1_11559,622,816 - 59,622,956 (-)NCBICHM1_1
T2T-CHM13v2.01557,014,721 - 57,014,861 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm22005
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:71
Interacting mature miRNAs:71
Transcripts:ENSMUST00000082795
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004941243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL732620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,292,415 - 3,292,555 (-)Ensembl
GRCm38.p6 Ensembl23,291,378 - 3,291,518 (-)Ensembl
RefSeq Acc Id: XR_004941243
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,292,415 - 3,292,555 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000075837 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082795 ENTREZGENE
MGD MGI:5451782 ENTREZGENE
NCBI Gene Gm22005 ENTREZGENE
PhenoGen Gm22005 PhenoGen