Gm23059 (predicted gene, 23059) - Rat Genome Database

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Gene: Gm23059 (predicted gene, 23059) Mus musculus
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Symbol: Gm23059
Name: predicted gene, 23059
RGD ID: 14999743
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391260,782,284 - 60,782,390 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1260,782,284 - 60,782,390 (+)EnsemblGRCm39 Ensembl
GRCm381260,735,498 - 60,735,604 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1260,735,498 - 60,735,604 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23059
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391260,782,284 - 60,782,390 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1260,782,284 - 60,782,390 (+)EnsemblGRCm39 Ensembl
GRCm381260,735,498 - 60,735,604 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1260,735,498 - 60,735,604 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
RNU6-530P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38779,343,266 - 79,343,372 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl779,343,266 - 79,343,372 (-)EnsemblGRCh38hg38GRCh38
GRCh37778,972,582 - 78,972,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q21.11NCBI
CHM1_1778,902,802 - 78,902,908 (-)NCBICHM1_1
T2T-CHM13v2.0780,595,074 - 80,595,180 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm23059
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:97
Interacting mature miRNAs:99
Transcripts:ENSMUST00000158978
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000158978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1260,782,284 - 60,782,390 (+)Ensembl
GRCm38.p6 Ensembl1260,735,498 - 60,735,604 (+)Ensembl
RefSeq Acc Id: XR_004937830
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391260,782,284 - 60,782,390 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089603 Ensembl
  ENSMUSG00000119332 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158978 ENTREZGENE
MGD MGI:5452836 ENTREZGENE
NCBI Gene Gm23059 ENTREZGENE
PhenoGen Gm23059 PhenoGen