Gm25459 (predicted gene, 25459) - Rat Genome Database

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Gene: Gm25459 (predicted gene, 25459) Mus musculus
Analyze
Symbol: Gm25459
Name: predicted gene, 25459
RGD ID: 14999702
MGI Page MGI
Description:
Type: pseudo (Ensembl: snoRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39522,564,162 - 22,564,275 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl522,564,162 - 22,564,275 (-)EnsemblGRCm39 Ensembl
GRCm38522,359,164 - 22,359,277 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl522,359,164 - 22,359,277 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm25459
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:188
Interacting mature miRNAs:197
Transcripts:ENSMUST00000157953
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412081Bwq13_mbody weight QTL 13 (mouse)Not determined5123606323Mouse
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
13432187Actdse1_mactivity chamber total difference saline/ethanol 1 (mouse)51819918023099180Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AC116404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000157953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl522,564,162 - 22,564,275 (-)Ensembl
GRCm38.p6 Ensembl522,359,164 - 22,359,277 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088578 Ensembl, ENTREZGENE
MGD MGI:5455236 ENTREZGENE
NCBI Gene Gm25459 ENTREZGENE
PhenoGen Gm25459 PhenoGen