Gm22140 (predicted gene, 22140) - Rat Genome Database

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Gene: Gm22140 (predicted gene, 22140) Mus musculus
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Symbol: Gm22140
Name: predicted gene, 22140
RGD ID: 14999259
MGI Page MGI
Description: INTERACTS WITH benzalkonium chloride (ortholog)
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39832,676,173 - 32,676,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl832,676,157 - 32,676,276 (+)EnsemblGRCm39 Ensembl
GRCm38832,186,145 - 32,186,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl832,186,129 - 32,186,248 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm22140
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39832,676,173 - 32,676,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl832,676,157 - 32,676,276 (+)EnsemblGRCm39 Ensembl
GRCm38832,186,145 - 32,186,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl832,186,129 - 32,186,248 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8A3NCBI
RNU6-454P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,339,749 - 15,339,850 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,339,749 - 15,339,855 (+)EnsemblGRCh38hg38GRCh38
GRCh37315,381,256 - 15,381,357 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p25.1NCBI
T2T-CHM13v2.0315,342,153 - 15,342,254 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm22140
10 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:37
Interacting mature miRNAs:37
Transcripts:ENSMUST00000158745
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81656937350569697Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81550657249506729Mouse
13524525Bodwtq7_mbody wweight QTL 7 (mouse)82824955647027681Mouse
11532713Sluc42_msusceptibility to lung cancer 42 (mouse)81344721035321225Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83250657271740637Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81945501853455150Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
1302173Vent1_mventricular size 1 (mouse)Not determined83183168634743564Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8721249935110107Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8810320142103372Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81550657249506729Mouse
13801029Gripgtt2_mglucose response to intraperitoneal glucose tolerance test 2, females only (mouse)83251002834987154Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8798418941984342Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3250657271740637Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8810320142103372Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8495000035067154Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8810320142103372Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81945501853455150Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81832109752321225Mouse
10043974Obq30_mobesity QTL 30 (mouse)Not determined82658332260583322Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004935210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000158745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl832,676,157 - 32,676,276 (+)Ensembl
GRCm38.p6 Ensembl832,186,129 - 32,186,248 (+)Ensembl
RefSeq Acc Id: XR_004935210
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39832,676,173 - 32,676,276 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089370 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158745 ENTREZGENE
MGD MGI:5451917 ENTREZGENE
NCBI Gene Gm22140 ENTREZGENE
PhenoGen Gm22140 PhenoGen