Gm24313 (predicted gene, 24313) - Rat Genome Database

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Gene: Gm24313 (predicted gene, 24313) Mus musculus
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Symbol: Gm24313
Name: predicted gene, 24313
RGD ID: 14999126
MGI Page MGI
Description: INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 2-hydroxypropanoic acid (ortholog)
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,569,808 - 6,569,940 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,569,808 - 6,569,940 (-)EnsemblGRCm39 Ensembl
GRCm38116,619,808 - 6,619,940 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,619,808 - 6,619,940 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm24313
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,569,808 - 6,569,940 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,569,808 - 6,569,940 (-)EnsemblGRCm39 Ensembl
GRCm38116,619,808 - 6,619,940 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,619,808 - 6,619,940 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
SNORA5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38745,104,349 - 45,104,482 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl745,104,349 - 45,104,482 (-)EnsemblGRCh38hg38GRCh38
GRCh37745,143,948 - 45,144,081 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36745,110,473 - 45,110,606 (-)NCBINCBI36Build 36hg18NCBI36
Celera745,242,791 - 45,242,924 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef745,027,753 - 45,027,886 (-)NCBIHuRef
CHM1_1745,147,637 - 45,147,770 (-)NCBICHM1_1
T2T-CHM13v2.0745,265,150 - 45,265,283 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2745,183,118 - 45,183,251 (-)NCBI
LOC120096784
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,700,633 - 85,700,761 (-)NCBIGRCr8
mRatBN7.21481,486,718 - 81,486,846 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,486,718 - 81,486,846 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1486,881,541 - 86,881,669 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14q21NCBI
LOC119869669
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,632,195 - 2,632,329 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,228,557 - 14,228,691 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,228,557 - 14,228,691 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01613,861,465 - 13,861,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,840,923 - 13,841,057 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24313
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:167
Interacting mature miRNAs:181
Transcripts:ENSMUST00000082561
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL603787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000082561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,569,808 - 6,569,940 (-)Ensembl
GRCm38.p6 Ensembl116,619,808 - 6,619,940 (-)Ensembl
RefSeq Acc Id: XR_004937328
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,569,808 - 6,569,940 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064495 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082561 ENTREZGENE
MGD MGI:5454090 ENTREZGENE
NCBI Gene Gm24313 ENTREZGENE
PhenoGen Gm24313 PhenoGen