Gm25008 (predicted gene, 25008) - Rat Genome Database

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Gene: Gm25008 (predicted gene, 25008) Mus musculus
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Symbol: Gm25008
Name: predicted gene, 25008
RGD ID: 14999013
MGI Page MGI
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,931,585 - 45,931,685 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,931,605 - 45,931,685 (+)EnsemblGRCm39 Ensembl
GRCm381745,620,659 - 45,620,759 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1745,620,679 - 45,620,759 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25008
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,931,585 - 45,931,685 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,931,605 - 45,931,685 (+)EnsemblGRCm39 Ensembl
GRCm381745,620,659 - 45,620,759 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1745,620,679 - 45,620,759 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17CNCBI
RNU6-774P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38484,233,657 - 84,233,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl484,233,657 - 84,233,763 (+)EnsemblGRCh38hg38GRCh38
GRCh37485,154,810 - 85,154,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q21.23NCBI
CHM1_1485,131,353 - 85,131,459 (+)NCBICHM1_1
T2T-CHM13v2.0487,563,618 - 87,563,724 (+)NCBIT2T-CHM13v2.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:20
Interacting mature miRNAs:20
Transcripts:ENSMUST00000083809
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
12903997Cfq4_mconditioned fear QTL 4 (mouse)174501655249366402Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
25394539Skmw85_mskeletal muscle weight 85, gastroc (mouse)174370766846831957Mouse
26884386Skwq13_mskull length QTL 13, 16 week (mouse)174371089153107028Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
4141478Hbnr7_mHeligmosomoides bakeri nematode resistance 7 (mouse)Not determined4305118551739122Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AC165259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000083809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1745,931,605 - 45,931,685 (+)Ensembl
GRCm38.p6 Ensembl1745,620,679 - 45,620,759 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065743 Ensembl, ENTREZGENE
MGD MGI:5454785 ENTREZGENE
NCBI Gene Gm25008 ENTREZGENE
PhenoGen Gm25008 PhenoGen