Gm25207 (predicted gene, 25207) - Rat Genome Database

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Gene: Gm25207 (predicted gene, 25207) Mus musculus
Analyze
Symbol: Gm25207
Name: predicted gene, 25207
RGD ID: 14998914
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X15,551,524 - 15,551,630 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX15,551,524 - 15,551,630 (-)EnsemblGRCm39 Ensembl
GRCm38X15,685,285 - 15,685,391 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX15,685,285 - 15,685,391 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXA1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25207
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X15,551,524 - 15,551,630 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX15,551,524 - 15,551,630 (-)EnsemblGRCm39 Ensembl
GRCm38X15,685,285 - 15,685,391 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX15,685,285 - 15,685,391 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXA1.1NCBI
RNU6-713P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381240,554,161 - 40,554,267 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1240,554,161 - 40,554,267 (-)EnsemblGRCh38hg38GRCh38
GRCh371240,947,963 - 40,948,069 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q12NCBI
CHM1_11240,912,228 - 40,912,334 (-)NCBICHM1_1
T2T-CHM13v2.01240,513,895 - 40,514,001 (-)NCBIT2T-CHM13v2.0
LOC119867392
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha338,317,804 - 8,317,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0338,301,841 - 8,301,947 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,301,841 - 8,301,947 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1338,190,272 - 8,190,378 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0338,236,608 - 8,236,715 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,577,140 - 8,577,246 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm25207
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:36
Interacting mature miRNAs:37
Transcripts:ENSMUST00000093745
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL732400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000093745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX15,685,285 - 15,685,391 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX15,551,524 - 15,551,630 (-)Ensembl
RefSeq Acc Id: XR_004940590
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X15,551,524 - 15,551,630 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000070258 Ensembl
  ENSMUSG00000118898 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000239881 ENTREZGENE
MGD MGI:5454984 ENTREZGENE
NCBI Gene Gm25207 ENTREZGENE
PhenoGen Gm25207 PhenoGen