Gm26454 (predicted gene, 26454) - Rat Genome Database

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Gene: Gm26454 (predicted gene, 26454) Mus musculus
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Symbol: Gm26454
Name: predicted gene, 26454
RGD ID: 14998613
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391249,056,666 - 49,056,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1249,056,666 - 49,056,772 (+)EnsemblGRCm39 Ensembl
GRCm381249,009,883 - 49,009,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1249,009,883 - 49,009,989 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm26454
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391249,056,666 - 49,056,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1249,056,666 - 49,056,772 (+)EnsemblGRCm39 Ensembl
GRCm381249,009,883 - 49,009,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1249,009,883 - 49,009,989 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12B3NCBI
RNU6-48P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,325,219 - 27,325,324 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,325,219 - 27,325,325 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,651,710 - 27,651,815 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.11NCBI
HuRef125,907,695 - 25,907,801 (+)NCBIHuRef
CHM1_1127,766,445 - 27,766,551 (+)NCBICHM1_1
T2T-CHM13v2.0127,166,453 - 27,166,558 (+)NCBIT2T-CHM13v2.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:166
Interacting mature miRNAs:174
Transcripts:ENSMUST00000082682
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000082682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1249,009,883 - 49,009,989 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1249,056,666 - 49,056,772 (+)Ensembl
RefSeq Acc Id: XR_004937909
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391249,056,666 - 49,056,772 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064616 Ensembl
  ENSMUSG00001118661 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000239848 ENTREZGENE
MGD MGI:5456231 ENTREZGENE
NCBI Gene Gm26454 ENTREZGENE
PhenoGen Gm26454 PhenoGen