Gm26387 (predicted gene, 26387) - Rat Genome Database

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Gene: Gm26387 (predicted gene, 26387) Mus musculus
Analyze
Symbol: Gm26387
Name: predicted gene, 26387
RGD ID: 14998452
MGI Page MGI
Description: ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); bisphenol A (ortholog); rac-lactic acid (ortholog)
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,055,211 - 108,055,342 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,055,211 - 108,055,342 (+)EnsemblGRCm39 Ensembl
GRCm385107,907,345 - 107,907,476 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,907,345 - 107,907,476 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5FNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm26387
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,055,211 - 108,055,342 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,055,211 - 108,055,342 (+)EnsemblGRCm39 Ensembl
GRCm385107,907,345 - 107,907,476 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,907,345 - 107,907,476 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5FNCBI
SNORA66
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,840,719 - 92,840,851 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,840,719 - 92,840,851 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,306,276 - 93,306,408 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,078,864 - 93,078,996 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,018,296 - 93,018,429NCBI
Celera191,559,868 - 91,560,000 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef191,427,442 - 91,427,574 (+)NCBIHuRef
CHM1_1193,421,072 - 93,421,204 (+)NCBICHM1_1
T2T-CHM13v2.0192,685,861 - 92,685,993 (+)NCBIT2T-CHM13v2.0
Snora66
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,991,391 - 1,991,522 (-)NCBIGRCr8
mRatBN7.2141,844,373 - 1,844,504 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,844,373 - 1,844,504 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map14p22NCBI
LOC119872406
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha658,905,191 - 58,905,327 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0656,583,289 - 56,583,425 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl656,583,289 - 56,583,425 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,262,923 - 56,263,059 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,240,982 - 56,241,118 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0656,700,967 - 56,701,103 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm26387
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:113
Interacting mature miRNAs:115
Transcripts:ENSMUST00000104238
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1301877Bbaa3_mB.burgdorferi-associated arthritis 3 (mouse)Not determined599455285112465722Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1357901Mdmsc2_mmodifier of muscularity 2 (mouse)Not determined5107561006112434786Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004942814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000104238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,055,211 - 108,055,342 (+)Ensembl
GRCm38.p6 Ensembl5107,907,345 - 107,907,476 (+)Ensembl
RefSeq Acc Id: XR_004942814
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,055,211 - 108,055,342 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000077426 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104238 ENTREZGENE
MGD MGI:5456164 ENTREZGENE
NCBI Gene Gm26387 ENTREZGENE
PhenoGen Gm26387 PhenoGen