Gm23151 (predicted gene, 23151) - Rat Genome Database

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Gene: Gm23151 (predicted gene, 23151) Mus musculus
Analyze
Symbol: Gm23151
Name: predicted gene, 23151
RGD ID: 14998414
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395126,466,612 - 126,466,718 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5126,466,612 - 126,466,718 (-)EnsemblGRCm39 Ensembl
GRCm385126,389,548 - 126,389,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5126,389,548 - 126,389,654 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5G1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23151
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395126,466,612 - 126,466,718 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5126,466,612 - 126,466,718 (-)EnsemblGRCm39 Ensembl
GRCm385126,389,548 - 126,389,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5126,389,548 - 126,389,654 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5G1.1NCBI
RNU6-1074P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384139,256,657 - 139,256,760 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4139,256,657 - 139,256,760 (-)EnsemblGRCh38hg38GRCh38
GRCh374140,177,811 - 140,177,914 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q31.1NCBI
CHM1_14140,155,022 - 140,155,125 (-)NCBICHM1_1
T2T-CHM13v2.04142,576,245 - 142,576,348 (-)NCBIT2T-CHM13v2.0
LOC119865273
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2242,964,040 - 42,964,143 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02243,509,332 - 43,509,435 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2243,509,332 - 43,509,435 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12243,194,563 - 43,194,666 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02243,233,961 - 43,234,064 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02243,236,570 - 43,236,673 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm23151
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:80
Interacting mature miRNAs:81
Transcripts:ENSMUST00000178061
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004942883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000178061
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5126,389,548 - 126,389,654 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5126,466,612 - 126,466,718 (-)Ensembl
RefSeq Acc Id: XR_004942883
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395126,466,612 - 126,466,718 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094875 Ensembl
  ENSMUSG00000119346 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000239978 ENTREZGENE
MGD MGI:5452928 ENTREZGENE
NCBI Gene Gm23151 ENTREZGENE
PhenoGen Gm23151 PhenoGen