Gm24963 (predicted gene, 24963) - Rat Genome Database

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Gene: Gm24963 (predicted gene, 24963) Mus musculus
Analyze
Symbol: Gm24963
Name: predicted gene, 24963
RGD ID: 14998352
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39317,305,465 - 17,305,608 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl317,305,465 - 17,305,608 (-)EnsemblGRCm39 Ensembl
GRCm38317,251,301 - 17,251,444 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl317,251,301 - 17,251,444 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm24963
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:81
Interacting mature miRNAs:84
Transcripts:ENSMUST00000157916
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301256Skmw1_mskeletal muscle weight 1 (mouse)Not determined3125786432Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
12798540Scvg2_msubcutaneous vessel growth QTL 2 (mouse)3744981526249645Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
12738410Lfibq2_mliver fibrosis QTL 2 (mouse)31206506020755242Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004941708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC168070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000157916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl317,305,465 - 17,305,608 (-)Ensembl
GRCm38.p6 Ensembl317,251,301 - 17,251,444 (-)Ensembl
RefSeq Acc Id: XR_004941708
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39317,305,465 - 17,305,608 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088541 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157916 ENTREZGENE
MGD MGI:5454740 ENTREZGENE
NCBI Gene Gm24963 ENTREZGENE
PhenoGen Gm24963 PhenoGen