Gm24493 (predicted gene, 24493) - Rat Genome Database

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Gene: Gm24493 (predicted gene, 24493) Mus musculus
Analyze
Symbol: Gm24493
Name: predicted gene, 24493
RGD ID: 14998324
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,813,858 - 36,814,000 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,813,858 - 36,814,000 (-)EnsemblGRCm39 Ensembl
GRCm38X37,632,205 - 37,632,347 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX37,632,205 - 37,632,347 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXA3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm24493
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:93
Interacting mature miRNAs:95
Transcripts:ENSMUST00000083805
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL808133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX36,813,858 - 36,814,000 (-)Ensembl
RefSeq Acc Id: ENSMUST00000083805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX37,632,205 - 37,632,347 (-)Ensembl
RefSeq Acc Id: XR_004940516
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,813,858 - 36,814,000 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065739 Ensembl
  ENSMUSG00000119532 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083154 ENTREZGENE
MGD MGI:5454270 ENTREZGENE
NCBI Gene Gm24493 ENTREZGENE
PhenoGen Gm24493 PhenoGen