Gm23296 (predicted gene, 23296) - Rat Genome Database

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Gene: Gm23296 (predicted gene, 23296) Mus musculus
Analyze
Symbol: Gm23296
Name: predicted gene, 23296
RGD ID: 14998103
MGI Page MGI
Description: INTERACTS WITH benzo[a]pyrene (ortholog)
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,651,268 - 52,651,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,651,268 - 52,651,374 (-)EnsemblGRCm39 Ensembl
GRCm381252,604,485 - 52,604,591 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1252,604,485 - 52,604,591 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm23296
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,651,268 - 52,651,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,651,268 - 52,651,374 (-)EnsemblGRCm39 Ensembl
GRCm381252,604,485 - 52,604,591 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1252,604,485 - 52,604,591 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
RNU6-8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381432,203,163 - 32,203,269 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1432,203,163 - 32,203,269 (-)EnsemblGRCh38hg38GRCh38
GRCh371432,672,369 - 32,672,475 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q12NCBI
HuRef1412,790,267 - 12,790,373 (-)NCBIHuRef
CHM1_11432,672,198 - 32,672,304 (-)NCBICHM1_1
T2T-CHM13v2.01426,400,790 - 26,400,896 (-)NCBIT2T-CHM13v2.0
LOC120093278
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,803,712 - 75,803,818 (+)NCBIGRCr8
mRatBN7.2670,068,373 - 70,068,479 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl670,068,373 - 70,068,479 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map6q23NCBI
LOC119866959
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3031,887,985 - 31,888,091 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03032,149,007 - 32,149,113 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3032,149,007 - 32,149,113 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13032,077,351 - 32,077,457 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03032,139,013 - 32,139,119 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03032,384,597 - 32,384,703 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm23296
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENSMUST00000082555
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000082555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1252,604,485 - 52,604,591 (-)Ensembl
RefSeq Acc Id: ENSMUST00000240265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1252,651,268 - 52,651,374 (-)Ensembl
RefSeq Acc Id: XR_004937908
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391252,651,268 - 52,651,374 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064489 Ensembl
  ENSMUSG00000119013 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000240265 ENTREZGENE
MGD MGI:5453073 ENTREZGENE
NCBI Gene Gm23296 ENTREZGENE
PhenoGen Gm23296 PhenoGen