Gm23124 (predicted gene, 23124) - Rat Genome Database

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Gene: Gm23124 (predicted gene, 23124) Mus musculus
Analyze
Symbol: Gm23124
Name: predicted gene, 23124
RGD ID: 14998089
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,397,559 - 133,397,665 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,397,559 - 133,397,665 (+)EnsemblGRCm39 Ensembl
GRCm38X134,496,810 - 134,496,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,496,810 - 134,496,916 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXE3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm23124
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:50
Interacting mature miRNAs:51
Transcripts:ENSMUST00000157650
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL672064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000157650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX133,397,559 - 133,397,665 (+)Ensembl
GRCm38.p6 EnsemblX134,496,810 - 134,496,916 (+)Ensembl
RefSeq Acc Id: XR_004940498
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X133,397,559 - 133,397,665 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088275 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157650 ENTREZGENE
MGD MGI:5452901 ENTREZGENE
NCBI Gene Gm23124 ENTREZGENE
PhenoGen Gm23124 PhenoGen