Gm23737 (predicted gene, 23737) - Rat Genome Database

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Gene: Gm23737 (predicted gene, 23737) Mus musculus
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Symbol: Gm23737
Name: predicted gene, 23737
RGD ID: 14997984
MGI Page MGI
Description: ASSOCIATED WITH schizophrenia (ortholog); thrombocytopenia-absent radius syndrome (ortholog)
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391588,903,424 - 88,903,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1588,903,424 - 88,903,582 (+)EnsemblGRCm39 Ensembl
GRCm381589,019,221 - 89,019,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,019,221 - 89,019,379 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map15E3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Gm23737
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391588,903,424 - 88,903,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1588,903,424 - 88,903,582 (+)EnsemblGRCm39 Ensembl
GRCm381589,019,221 - 89,019,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,019,221 - 89,019,379 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map15E3NCBI
RNVU1-27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381148,522,601 - 148,522,765 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1148,522,601 - 148,522,765 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1q21.2NCBI
T2T-CHM13v2.01146,284,584 - 146,284,748 (-)NCBIT2T-CHM13v2.0
LOC120101277
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,631,884 - 186,632,047 (+)NCBIGRCr8
mRatBN7.22183,943,024 - 183,943,187 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,943,024 - 183,943,187 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q34NCBI

Variants

.
Variants in Gm23737
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:68
Interacting mature miRNAs:70
Transcripts:ENSMUST00000082547
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
1558845Alprf_malcohol preference (mouse)Not determined158734927190274568Mouse
12738413Lfibq10_mliver fibrosis QTL 10 (mouse)158784208589927286Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000082547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1588,903,424 - 88,903,582 (+)Ensembl
GRCm38.p6 Ensembl1589,019,221 - 89,019,379 (+)Ensembl
RefSeq Acc Id: XR_004939127
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391588,903,424 - 88,903,582 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064481 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082547 ENTREZGENE
MGD MGI:5453514 ENTREZGENE
NCBI Gene Gm23737 ENTREZGENE
PhenoGen Gm23737 PhenoGen