Gm23509 (predicted gene, 23509) - Rat Genome Database

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Gene: Gm23509 (predicted gene, 23509) Mus musculus
Analyze
Symbol: Gm23509
Name: predicted gene, 23509
RGD ID: 14997228
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391493,375,466 - 93,375,625 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1493,375,466 - 93,375,625 (-)EnsemblGRCm39 Ensembl
GRCm381493,138,030 - 93,138,189 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1493,138,030 - 93,138,189 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14E2.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENSMUST00000083080
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
13524530Bodwtq11_mbody wweight QTL 11 (mouse)1487767629102538219Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004938712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083080
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1493,375,466 - 93,375,625 (-)Ensembl
GRCm38.p6 Ensembl1493,138,030 - 93,138,189 (-)Ensembl
RefSeq Acc Id: XR_004938712
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391493,375,466 - 93,375,625 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065014 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083080 ENTREZGENE
MGD MGI:5453286 ENTREZGENE
NCBI Gene Gm23509 ENTREZGENE
PhenoGen Gm23509 PhenoGen