Gm24948 (predicted gene, 24948) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gm24948 (predicted gene, 24948) Mus musculus
Analyze
Symbol: Gm24948
Name: predicted gene, 24948
RGD ID: 14996943
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391246,031,126 - 46,031,332 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1246,031,126 - 46,031,332 (+)EnsemblGRCm39 Ensembl
GRCm381245,984,343 - 45,984,549 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1245,984,343 - 45,984,549 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24948
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391246,031,126 - 46,031,332 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1246,031,126 - 46,031,332 (+)EnsemblGRCm39 Ensembl
GRCm381245,984,343 - 45,984,549 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1245,984,343 - 45,984,549 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12B3NCBI
SNORA73
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381856,079,394 - 56,079,594 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1856,079,394 - 56,079,594 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map18q21.2NCBI
T2T-CHM13v2.01856,282,152 - 56,282,352 (-)NCBIT2T-CHM13v2.0
LOC120093317
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8668,782,258 - 68,782,461 (+)NCBIGRCr8
mRatBN7.2663,055,350 - 63,055,553 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl663,055,350 - 63,055,553 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl666,235,237 - 66,235,440 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map6q21NCBI

Variants

.
Variants in Gm24948
10 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:36
Interacting mature miRNAs:37
Transcripts:ENSMUST00000082866
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000082866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1246,031,126 - 46,031,332 (+)Ensembl
GRCm38.p6 Ensembl1245,984,343 - 45,984,549 (+)Ensembl
RefSeq Acc Id: XR_004937833
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391246,031,126 - 46,031,332 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064800 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082866 ENTREZGENE
MGD MGI:5454725 ENTREZGENE
NCBI Gene Gm24948 ENTREZGENE
PhenoGen Gm24948 PhenoGen