Gm26552 (predicted gene, 26552) - Rat Genome Database

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Gene: Gm26552 (predicted gene, 26552) Mus musculus
Analyze
Symbol: Gm26552
Name: predicted gene, 26552
RGD ID: 14996864
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391417,248,032 - 17,364,832 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1417,248,061 - 17,308,327 (+)EnsemblGRCm39 Ensembl
GRCm38145,105,043 - 5,221,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,161,446 - 5,221,712 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14A2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm26552
4139 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:246
Interacting mature miRNAs:256
Transcripts:ENSMUST00000180399, ENSMUST00000180980, ENSMUST00000181033, ENSMUST00000181649
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412071Ssen3_msuseptibility to Sendai virus 3 (mouse)Not determined14126987934Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
13824988Phsq1_mpercent hyperactivated sperm QTL 1 (mouse)14305000119469772Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000180399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,248,081 - 17,278,695 (+)Ensembl
GRCm38.p6 Ensembl145,191,078 - 5,221,692 (-)Ensembl
RefSeq Acc Id: ENSMUST00000180980
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,248,081 - 17,259,176 (+)Ensembl
GRCm38.p6 Ensembl145,210,597 - 5,221,692 (-)Ensembl
RefSeq Acc Id: ENSMUST00000181033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,248,061 - 17,308,327 (+)Ensembl
GRCm38.p6 Ensembl145,161,446 - 5,221,712 (-)Ensembl
RefSeq Acc Id: ENSMUST00000181649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,248,074 - 17,258,277 (+)Ensembl
GRCm38.p6 Ensembl145,211,496 - 5,221,699 (-)Ensembl
RefSeq Acc Id: XR_003950944
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391417,248,032 - 17,257,576 (+)NCBI
GRCm38145,212,197 - 5,221,737 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950945
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391417,248,032 - 17,272,296 (+)NCBI
GRCm38145,197,476 - 5,221,737 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950946
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391417,248,032 - 17,364,832 (+)NCBI
GRCm38145,105,043 - 5,221,737 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950947
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391417,248,032 - 17,347,182 (+)NCBI
GRCm38145,122,587 - 5,221,737 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950948
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391417,248,032 - 17,347,166 (+)NCBI
GRCm38145,122,603 - 5,221,737 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097218 Ensembl
MGD MGI:5477046 ENTREZGENE
NCBI Gene Gm26552 ENTREZGENE
PhenoGen Gm26552 PhenoGen