Gm25169 (predicted gene, 25169) - Rat Genome Database

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Gene: Gm25169 (predicted gene, 25169) Mus musculus
Analyze
Symbol: Gm25169
Name: predicted gene, 25169
RGD ID: 14996844
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3987,688,764 - 7,688,892 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl87,688,764 - 7,688,892 (+)EnsemblGRCm39 Ensembl
GRCm3887,638,764 - 7,638,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl87,638,764 - 7,638,892 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8A1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm25169
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:128
Interacting mature miRNAs:136
Transcripts:ENSMUST00000104190
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124751082Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8495000035067154Mouse
1357525Pnhdlc3_mplasma non-HDL cholesterol 3 (mouse)Not determined8721249923753815Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8721249935110107Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004935254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000104190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl87,688,764 - 7,688,892 (+)Ensembl
GRCm38.p6 Ensembl87,638,764 - 7,638,892 (+)Ensembl
RefSeq Acc Id: XR_004935254
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3987,688,764 - 7,688,892 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000077378 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104190 ENTREZGENE
MGD MGI:5454946 ENTREZGENE
NCBI Gene Gm25169 ENTREZGENE
PhenoGen Gm25169 PhenoGen