Gm23786 (predicted gene, 23786) - Rat Genome Database

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Gene: Gm23786 (predicted gene, 23786) Mus musculus
Analyze
Symbol: Gm23786
Name: predicted gene, 23786
RGD ID: 14996606
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,531,552 - 161,531,670 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,531,552 - 161,531,670 (+)EnsemblGRCm39 Ensembl
GRCm39 EnsemblX161,531,550 - 161,531,670 (+)EnsemblGRCm39 Ensembl
GRCm38X162,748,556 - 162,748,674 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,748,556 - 162,748,674 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,748,554 - 162,748,674 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXF4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23786
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,531,552 - 161,531,670 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,531,552 - 161,531,670 (+)EnsemblGRCm39 Ensembl
GRCm39 EnsemblX161,531,550 - 161,531,670 (+)EnsemblGRCm39 Ensembl
GRCm38X162,748,556 - 162,748,674 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,748,556 - 162,748,674 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,748,554 - 162,748,674 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXF4NCBI
SNORA50D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38569,160,808 - 69,160,939 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl569,160,808 - 69,160,939 (+)EnsemblGRCh38hg38GRCh38
GRCh37568,456,635 - 68,456,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q13.2NCBI
T2T-CHM13v2.0569,983,391 - 69,983,522 (+)NCBIT2T-CHM13v2.0
LOC120093478
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86101,607,266 - 101,607,382 (-)NCBIGRCr8
mRatBN7.2695,874,149 - 95,874,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl695,874,149 - 95,874,265 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl6100,233,896 - 100,234,012 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map6q24NCBI

Variants

.
Variants in Gm23786
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:98
Interacting mature miRNAs:98
Transcripts:ENSMUST00000116744
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357619Obsty5_mobesity 5 (mouse)Not determinedX160212893164149284Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL672123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000116744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX162,748,554 - 162,748,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,531,552 - 161,531,670 (+)Ensembl
GRCm38.p6 EnsemblX162,748,556 - 162,748,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00020182127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,531,550 - 161,531,670 (+)Ensembl
RefSeq Acc Id: XR_004940564
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X161,531,552 - 161,531,670 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080394 Ensembl
  ENSMUSG00000104536 Ensembl, ENTREZGENE
  ENSMUSG00002076423 Ensembl
Ensembl Transcript ENSMUST00000200181 ENTREZGENE
MGD MGI:5453563 ENTREZGENE
NCBI Gene Gm23786 ENTREZGENE
PhenoGen Gm23786 PhenoGen