Gm23322 (predicted gene, 23322) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm23322 (predicted gene, 23322) Mus musculus
Analyze
Symbol: Gm23322
Name: predicted gene, 23322
RGD ID: 14996480
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X108,053,287 - 108,053,453 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX108,053,287 - 108,053,453 (-)EnsemblGRCm39 Ensembl
GRCm38X109,009,681 - 109,009,847 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX109,009,681 - 109,009,847 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXDNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23322
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X108,053,287 - 108,053,453 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX108,053,287 - 108,053,453 (-)EnsemblGRCm39 Ensembl
GRCm38X109,009,681 - 109,009,847 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX109,009,681 - 109,009,847 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXDNCBI
RNU1-101P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38870,077,906 - 70,078,032 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl870,077,906 - 70,078,032 (-)EnsemblGRCh38hg38GRCh38
GRCh37870,990,141 - 70,990,267 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q13.3NCBI
CHM1_1871,045,653 - 71,045,779 (-)NCBICHM1_1
T2T-CHM13v2.0870,507,761 - 70,507,887 (-)NCBIT2T-CHM13v2.0
LOC119867140
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha317,403,031 - 7,403,192 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0317,347,705 - 7,347,866 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl317,347,705 - 7,347,866 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1317,309,322 - 7,309,483 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0317,362,448 - 7,362,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0317,749,775 - 7,749,936 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm23322
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:50
Interacting mature miRNAs:50
Transcripts:ENSMUST00000104464
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL954348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000104464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX108,053,287 - 108,053,453 (-)Ensembl
GRCm38.p6 EnsemblX109,009,681 - 109,009,847 (-)Ensembl
RefSeq Acc Id: XR_004940558
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X108,053,287 - 108,053,453 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000077652 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104464 ENTREZGENE
MGD MGI:5453099 ENTREZGENE
NCBI Gene Gm23322 ENTREZGENE
PhenoGen Gm23322 PhenoGen