Gm26071 (predicted gene, 26071) - Rat Genome Database

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Gene: Gm26071 (predicted gene, 26071) Mus musculus
Analyze
Symbol: Gm26071
Name: predicted gene, 26071
RGD ID: 14996249
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391235,491,189 - 35,491,295 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1235,491,189 - 35,491,295 (+)EnsemblGRCm39 Ensembl
GRCm381235,441,190 - 35,441,296 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1235,441,190 - 35,441,296 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm26071
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391235,491,189 - 35,491,295 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1235,491,189 - 35,491,295 (+)EnsemblGRCm39 Ensembl
GRCm381235,441,190 - 35,441,296 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1235,441,190 - 35,441,296 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12A3NCBI
RNU6-98P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X132,580,128 - 132,580,223 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX132,580,117 - 132,580,223 (-)EnsemblGRCh38hg38GRCh38
GRCh37X131,714,156 - 131,714,251 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq26.2NCBI
CHM1_1X131,625,671 - 131,625,766 (-)NCBICHM1_1
T2T-CHM13v2.0X130,904,789 - 130,904,884 (-)NCBIT2T-CHM13v2.0
LOC120097309
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81590,213,852 - 90,213,956 (+)NCBIGRCr8
mRatBN7.21583,799,316 - 83,799,420 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1583,799,316 - 83,799,420 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1591,271,243 - 91,271,346 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15q22NCBI
LOC119872101
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha516,577,715 - 16,577,821 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0516,470,605 - 16,470,711 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl516,470,605 - 16,470,711 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1516,608,120 - 16,608,226 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0516,510,568 - 16,510,674 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0516,553,071 - 16,553,177 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm26071
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:329
Count of miRNA genes:292
Interacting mature miRNAs:316
Transcripts:ENSMUST00000083261
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1235,441,190 - 35,441,296 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1235,491,189 - 35,491,295 (+)Ensembl
RefSeq Acc Id: XR_004937903
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391235,491,189 - 35,491,295 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065195 Ensembl
  ENSMUSG00000119582 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000240401 ENTREZGENE
MGD MGI:5455848 ENTREZGENE
NCBI Gene Gm26071 ENTREZGENE
PhenoGen Gm26071 PhenoGen