GLCCI1-DT (GLCCI1 divergent transcript) - Rat Genome Database

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Gene: GLCCI1-DT (GLCCI1 divergent transcript) Homo sapiens
Analyze
Symbol: GLCCI1-DT
Name: GLCCI1 divergent transcript
RGD ID: 14700624
HGNC Page HGNC:40852
Description:
Type: ncrna
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3877,949,839 - 7,968,752 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3777,989,470 - 8,008,383 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7p21.3NCBI
HuRef77,833,425 - 7,845,448 (-)NCBIHuRef
CHM1_177,983,346 - 7,995,389 (-)NCBICHM1_1
T2T-CHM13v2.078,068,359 - 8,087,268 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12853948  


Genomics

Variants

.
Variants in GLCCI1-DT
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p22.3-15.3(chr7:53985-24361531)x3 copy number gain See cases [RCV000053528] Chr7:53985..24361531 [GRCh38]
Chr7:53985..24401150 [GRCh37]
Chr7:149068..24367675 [NCBI36]
Chr7:7p22.3-15.3		 pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:43360-27196404)x3 copy number gain See cases [RCV000143586] Chr7:43360..27196404 [GRCh38]
Chr7:43360..27236023 [GRCh37]
Chr7:138443..27202548 [NCBI36]
Chr7:7p22.3-15.2		 pathogenic
GRCh38/hg38 7p21.3(chr7:7249455-10718595)x3 copy number gain See cases [RCV000139695] Chr7:7249455..10718595 [GRCh38]
Chr7:7289086..10758222 [GRCh37]
Chr7:7255611..10724747 [NCBI36]
Chr7:7p21.3		 likely benign
GRCh38/hg38 7p22.3-14.2(chr7:54185-37089712)x3 copy number gain See cases [RCV000053530] Chr7:54185..37089712 [GRCh38]
Chr7:54185..37129317 [GRCh37]
Chr7:149268..37095842 [NCBI36]
Chr7:7p22.3-14.2		 pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:54185-26827634)x3 copy number gain See cases [RCV000136557] Chr7:54185..26827634 [GRCh38]
Chr7:54185..26867253 [GRCh37]
Chr7:149268..26833778 [NCBI36]
Chr7:7p22.3-15.2		 pathogenic
GRCh38/hg38 7p22.1-15.2(chr7:5682209-27230311)x3 copy number gain See cases [RCV000136649] Chr7:5682209..27230311 [GRCh38]
Chr7:5721840..27269930 [GRCh37]
Chr7:5688366..27236455 [NCBI36]
Chr7:7p22.1-15.2		 pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:1698124-27207295)x3 copy number gain See cases [RCV000143060] Chr7:1698124..27207295 [GRCh38]
Chr7:1737760..27246914 [GRCh37]
Chr7:1704286..27213439 [NCBI36]
Chr7:7p22.3-15.2		 pathogenic
GRCh38/hg38 7p22.1-21.3(chr7:6887830-8054546)x3 copy number gain See cases [RCV000137744] Chr7:6887830..8054546 [GRCh38]
Chr7:6927461..8094176 [GRCh37]
Chr7:6893986..8060701 [NCBI36]
Chr7:7p22.1-21.3		 uncertain significance
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3 copy number gain See cases [RCV000051159] Chr7:54185..41875885 [GRCh38]
Chr7:54185..41915483 [GRCh37]
Chr7:149268..41882008 [NCBI36]
Chr7:7p22.3-14.1		 pathogenic
GRCh38/hg38 7p22.1-21.3(chr7:6831253-8010127)x3 copy number gain See cases [RCV000138318] Chr7:6831253..8010127 [GRCh38]
Chr7:6870884..8049757 [GRCh37]
Chr7:6837409..8016282 [NCBI36]
Chr7:7p22.1-21.3		 likely benign
GRCh38/hg38 7p21.3(chr7:7815001-8767755)x3 copy number gain See cases [RCV000139667] Chr7:7815001..8767755 [GRCh38]
Chr7:7854632..8807385 [GRCh37]
Chr7:7821157..8773910 [NCBI36]
Chr7:7p21.3		 likely benign
GRCh38/hg38 7p22.3-15.3(chr7:45130-25221165)x3 copy number gain See cases [RCV000137824] Chr7:45130..25221165 [GRCh38]
Chr7:45130..25260784 [GRCh37]
Chr7:140213..25227309 [NCBI36]
Chr7:7p22.3-15.3		 pathogenic
NM_138426.2(GLCCI1):c.-1106G= single nucleotide variant Glucocorticoid therapy, response to [RCV000024148] Chr7:7968245 [GRCh38]
Chr7:8007876 [GRCh37]
Chr7:7p21.3		 drug response
GRCh38/hg38 7p22.1-21.3(chr7:6106402-11012657)x1 copy number loss See cases [RCV000050923] Chr7:6106402..11012657 [GRCh38]
Chr7:6146033..11052284 [GRCh37]
Chr7:6112559..11018809 [NCBI36]
Chr7:7p22.1-21.3		 pathogenic

Expression


Sequence


Reference Sequences
RefSeq Acc Id: NR_110018
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3877,949,839 - 7,968,752 (-)NCBI
T2T-CHM13v2.078,068,359 - 8,087,268 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC GLCCI1-DT COSMIC
GTEx GLCCI1-DT GTEx
HGNC ID HGNC:40852 ENTREZGENE
Human Proteome Map GLCCI1-DT Human Proteome Map
NCBI Gene GLCCI1-DT ENTREZGENE
RNAcentral URS000075BA7C RNACentral